3D structure

PDB id
4BTS (explore in PDB, NAKB, or RNA 3D Hub)
Description
THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A
Experimental method
X-RAY DIFFRACTION
Resolution
3.7 Å

Loop

Sequence
CAAUG*CGUGUUAG*CGAG
Length
17 nucleotides
Bulged bases
4BTS|1|DA|U|1444, 4BTS|1|DA|A|1511
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4BTS_052 not in the Motif Atlas
Homologous match to J3_8C3A_044
Geometric discrepancy: 0.1952
The information below is about J3_8C3A_044
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.4
Basepair signature
cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
Number of instances in this motif group
5

Unit IDs

4BTS|1|DA|C|1441
4BTS|1|DA|A|1442
4BTS|1|DA|A|1443
4BTS|1|DA|U|1444
4BTS|1|DA|G|1445
*
4BTS|1|DA|C|1505
4BTS|1|DA|G|1506
4BTS|1|DA|U|1507
4BTS|1|DA|G|1508
4BTS|1|DA|U|1509
4BTS|1|DA|U|1510
4BTS|1|DA|A|1511
4BTS|1|DA|G|1512
*
4BTS|1|DA|C|1543
4BTS|1|DA|G|1544
4BTS|1|DA|A|1545
4BTS|1|DA|G|1546

Current chains

Chain DA
18S ribosomal RNA

Nearby chains

Chain D8
40S RIBOSOMAL PROTEIN RPS25E
Chain DG
40S RIBOSOMAL PROTEIN RPS5E
Chain DM
40S RIBOSOMAL PROTEIN RPS18E
Chain DT
40S RIBOSOMAL PROTEIN RPS19E

Coloring options:


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