Motif J3_37047.4 Version J3_37047.4 of this group appears in releases 3.91 to 3.94

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7	break		8		9		10		11	break		12		13		14		15	1-15	2-3	4-14	5-6	6-13	7-8	11-12	13-15
1	J3_8C3A_044	8C3A	0.1937	2	CM	SSU rRNA	C	1520	G	1521	U	1522	G	1523	C	1524	U	1525	G	1527	*	C	1558	G	1559	A	1560	G	1561	*	C	1456	A	1457	C	1458	G	1460	cWW	ncSH		ncSH	tWH	cWW	cWW	ncsS
2	J3_6CZR_026	6CZR	0.1550	2	1a	SSU rRNA	C	1278	C	1279	C	1280	A	1281	G	1282	U	1283	C	1285	*	G	1316	C	1317	C	1318	G	1319	*	C	1219	A	1220	A	1221	G	1223	cWW	ncSH		ncSH	tWH	cWW	cWW	csS
3	J3_4LFB_009	4LFB	0.0000	2	A	SSU rRNA	C	1296	C	1297	C	1298	A	1299	G	1300	U	1301	C	1303	*	G	1334	C	1335	C	1336	G	1337	*	C	1237	A	1238	A	1239	G	1241	cWW	cSH	ntHH	ncSH	tWH	cWW	cWW	ncsS
4	J3_5J7L_011	5J7L	0.1532	2	AA	SSU rRNA	C	1296	G	1297	U	1298	A	1299	G	1300	U	1301	C	1303	*	G	1334	U	1335	C	1336	G	1337	*	C	1237	A	1238	A	1239	G	1241	cWW			cSH	tWH	cWW	cWW	ncsS
5	J3_8P9A_084	8P9A	0.2367	2	sR	SSU rRNA	C	1533	G	1534	U	1535	G	1536	C	1537	U	1538	G	1540	*	C	1571	G	1572	A	1573	G	1574	*	C	1470	A	1471	C	1472	G	1474	cWW				tWH	cWW	cWW	csS

3D structures

Complete motif including flanking bases

Sequence	Counts
CACUGCGUGCUGGCGAG	2
CAAUGCCCAGUUCGCCG	2
CAAUGCGUAGUCCGUCG	1

Non-Watson-Crick part of the motif

Sequence	Counts
ACUGUGCUGGA	2
AAUCCAGUUCC	2
AAUGUAGUCUC	1

Release history

Release	3.91	3.92	3.93	3.94
Date	2024-12-04	2025-01-01	2025-01-29	2025-02-26
Status	Updated, 1 parent	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
Heat map statistics: Min 0.15 | Avg 0.18 | Max 0.31

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Coloring options: Nucleotide numbers

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