J3_8C3A_044

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CACUG*CGUGCUGG*CGAG

Length

17 nucleotides

Bulged bases

8C3A|1|CM|U|1459, 8C3A|1|CM|G|1526

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.4

Basepair signature

cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F

Number of instances in this motif group

5

Unit IDs

8C3A|1|CM|C|1456
8C3A|1|CM|A|1457
8C3A|1|CM|C|1458
8C3A|1|CM|U|1459
8C3A|1|CM|G|1460
*
8C3A|1|CM|C|1520
8C3A|1|CM|G|1521
8C3A|1|CM|U|1522
8C3A|1|CM|G|1523
8C3A|1|CM|C|1524
8C3A|1|CM|U|1525
8C3A|1|CM|G|1526
8C3A|1|CM|G|1527
*
8C3A|1|CM|C|1558
8C3A|1|CM|G|1559
8C3A|1|CM|A|1560
8C3A|1|CM|G|1561

Current chains

Chain CM

18S

Nearby chains

Chain CS

Ribosomal protein S7

Chain DF

40S ribosomal protein S18-B

Chain DG

40S ribosomal protein S19-A

Chain DM

40S ribosomal protein S25