J3_4CSU_007

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CSU_007 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.2366

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4CSU|1|B|C|2091
4CSU|1|B|U|2092
4CSU|1|B|G|2093
*
4CSU|1|B|C|2196
4CSU|1|B|U|2197
4CSU|1|B|A|2198
4CSU|1|B|A|2199
4CSU|1|B|C|2200
*
4CSU|1|B|G|2223
4CSU|1|B|G|2224
4CSU|1|B|A|2225
4CSU|1|B|C|2226
4CSU|1|B|A|2227
4CSU|1|B|G|2228

Current chains

Chain B

23S RRNA

Nearby chains

Chain 0

50S RIBOSOMAL PROTEIN L28

Chain C

50S RIBOSOMAL PROTEIN L2

Chain H

50S RIBOSOMAL PROTEIN L9