J3_4CSU_008
3D structure
- PDB id
- 4CSU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of the 50S ribosome subunit bound with ObgE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- CUA*UAG*CAUAAG
- Length
- 12 nucleotides
- Bulged bases
- 4CSU|1|B|U|2334, 4CSU|1|B|A|2336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4CSU_008 not in the Motif Atlas
- Homologous match to J3_7RQB_011
- Geometric discrepancy: 0.231
- The information below is about J3_7RQB_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.4
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4CSU|1|B|C|2295
4CSU|1|B|U|2296
4CSU|1|B|A|2297
*
4CSU|1|B|U|2321
4CSU|1|B|A|2322
4CSU|1|B|G|2323
*
4CSU|1|B|C|2332
4CSU|1|B|A|2333
4CSU|1|B|U|2334
4CSU|1|B|A|2335
4CSU|1|B|A|2336
4CSU|1|B|G|2337
Current chains
- Chain B
- 23S RRNA
Nearby chains
- Chain A
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 50S RIBOSOMAL PROTEIN L5
- Chain O
- 50S RIBOSOMAL PROTEIN L18
- Chain Y
- 50S RIBOSOMAL PROTEIN L27
Coloring options: