J3_4CSU_010

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

4CSU|1|B|U|2833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CSU_010 not in the Motif Atlas

Homologous match to J3_5J7L_048

Geometric discrepancy: 0.5604

The information below is about J3_5J7L_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64069.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4CSU|1|B|G|2812
4CSU|1|B|A|2813
4CSU|1|B|A|2814
4CSU|1|B|C|2815
*
4CSU|1|B|G|2831
4CSU|1|B|U|2832
4CSU|1|B|U|2833
4CSU|1|B|G|2834
4CSU|1|B|A|2835
4CSU|1|B|U|2836
*
4CSU|1|B|A|2882
4CSU|1|B|A|2883
4CSU|1|B|U|2884
4CSU|1|B|G|2885
4CSU|1|B|A|2886
4CSU|1|B|A|2887
4CSU|1|B|C|2888

Current chains

Chain B

23S RRNA

Nearby chains

Chain 3

50S RIBOSOMAL PROTEIN L32

Chain D

50S RIBOSOMAL PROTEIN L3

Chain N

50S RIBOSOMAL PROTEIN L17