J3_4CUV_003

3D structure

PDB id

4CUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUAG*CGUAG*UCGAAU

Length

15 nucleotides

Bulged bases

4CUV|1|1|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CUV_003 not in the Motif Atlas

Geometric match to J3_8P9A_050

Geometric discrepancy: 0.1185

The information below is about J3_8P9A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_21998.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4CUV|1|1|A|828
4CUV|1|1|U|829
4CUV|1|1|A|830
4CUV|1|1|G|831
*
4CUV|1|1|C|863
4CUV|1|1|G|864
4CUV|1|1|U|865
4CUV|1|1|A|866
4CUV|1|1|G|867
*
4CUV|1|1|U|892
4CUV|1|1|C|893
4CUV|1|1|G|894
4CUV|1|1|A|895
4CUV|1|1|A|896
4CUV|1|1|U|897

Current chains

Chain 1

25S RRNA

Nearby chains