J3_4CUV_006
3D structure
- PDB id
- 4CUV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAA*UGAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 4CUV|1|1|U|1840, 4CUV|1|1|A|1841, 4CUV|1|1|A|1842
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4CUV_006 not in the Motif Atlas
- Geometric match to J3_8P9A_054
- Geometric discrepancy: 0.0859
- The information below is about J3_8P9A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76012.1
- Basepair signature
- cWW-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
4CUV|1|1|G|1488
4CUV|1|1|A|1489
4CUV|1|1|A|1490
4CUV|1|1|A|1491
*
4CUV|1|1|U|1837
4CUV|1|1|G|1838
4CUV|1|1|A|1839
4CUV|1|1|U|1840
4CUV|1|1|A|1841
4CUV|1|1|A|1842
4CUV|1|1|C|1843
*
4CUV|1|1|G|1852
4CUV|1|1|U|1853
4CUV|1|1|C|1854
Current chains
- Chain 1
- 25S RRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: