J3_4CUV_007

3D structure

PDB id

4CUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUUG*CUUAUU*AAGACAUU

Length

18 nucleotides

Bulged bases

4CUV|1|1|U|2514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CUV_007 not in the Motif Atlas

Geometric match to J3_8CRE_019

Geometric discrepancy: 0.1025

The information below is about J3_8CRE_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84052.1

Basepair signature

cWW-F-F-F-F-cWW-F-tWH-tHS-F-F-cWW

Number of instances in this motif group

2

Unit IDs

4CUV|1|1|A|2432
4CUV|1|1|U|2433
4CUV|1|1|U|2434
4CUV|1|1|G|2435
*
4CUV|1|1|C|2512
4CUV|1|1|U|2513
4CUV|1|1|U|2514
4CUV|1|1|A|2515
4CUV|1|1|U|2516
4CUV|1|1|U|2517
*
4CUV|1|1|A|2590
4CUV|1|1|A|2591
4CUV|1|1|G|2592
4CUV|1|1|A|2593
4CUV|1|1|C|2594
4CUV|1|1|A|2595
4CUV|1|1|U|2596
4CUV|1|1|U|2597

Current chains

Chain 1

25S RRNA

Nearby chains