J3_4CUV_009

3D structure

PDB id

4CUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUC*GAA*UAAAAG

Length

12 nucleotides

Bulged bases

4CUV|1|1|A|2703, 4CUV|1|1|A|2705

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CUV_009 not in the Motif Atlas

Geometric match to J3_8P9A_062

Geometric discrepancy: 0.0856

The information below is about J3_8P9A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05327.1

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

10

Unit IDs

4CUV|1|1|C|2664
4CUV|1|1|U|2665
4CUV|1|1|C|2666
*
4CUV|1|1|G|2690
4CUV|1|1|A|2691
4CUV|1|1|A|2692
*
4CUV|1|1|U|2701
4CUV|1|1|A|2702
4CUV|1|1|A|2703
4CUV|1|1|A|2704
4CUV|1|1|A|2705
4CUV|1|1|G|2706

Current chains

Chain 1

25S RRNA

Nearby chains

Chain 3

5S RRNA