J3_4CUV_010

3D structure

PDB id

4CUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

4CUV|1|1|A|2887, 4CUV|1|1|U|2888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CUV_010 not in the Motif Atlas

Geometric match to J3_8P9A_063

Geometric discrepancy: 0.0882

The information below is about J3_8P9A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44047.1

Basepair signature

cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4CUV|1|1|U|2886
4CUV|1|1|A|2887
4CUV|1|1|U|2888
4CUV|1|1|C|2889
*
4CUV|1|1|G|2914
4CUV|1|1|U|2915
4CUV|1|1|U|2916
*
4CUV|1|1|A|2930
4CUV|1|1|C|2931
4CUV|1|1|U|2932
4CUV|1|1|A|2933
4CUV|1|1|A|2934
4CUV|1|1|U|2935
4CUV|1|1|A|2936

Current chains

Chain 1

25S RRNA

Nearby chains