J3_4CUV_011

3D structure

PDB id

4CUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAU*AGAUG*CUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CUV_011 not in the Motif Atlas

Geometric match to J3_8P9A_065

Geometric discrepancy: 0.1344

The information below is about J3_8P9A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_81015.1

Basepair signature

cWW-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

4CUV|1|1|C|3298
4CUV|1|1|A|3299
4CUV|1|1|U|3300
*
4CUV|1|1|A|3314
4CUV|1|1|G|3315
4CUV|1|1|A|3316
4CUV|1|1|U|3317
4CUV|1|1|G|3318
*
4CUV|1|1|C|3388
4CUV|1|1|U|3389
4CUV|1|1|G|3390

Current chains

Chain 1

25S RRNA

Nearby chains