J3_4CUV_016

3D structure

PDB id

4CUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UC*GAGGACUGCG*CAAGGA

Length

18 nucleotides

Bulged bases

4CUV|1|1|A|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CUV_016 not in the Motif Atlas

Geometric match to J3_8P9A_048

Geometric discrepancy: 0.0975

The information below is about J3_8P9A_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_86133.1

Basepair signature

cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4CUV|1|1|U|502
4CUV|1|1|C|503
*
4CUV|1|1|G|588
4CUV|1|1|A|589
4CUV|1|1|G|590
4CUV|1|1|G|591
4CUV|1|1|A|592
4CUV|1|1|C|593
4CUV|1|1|U|594
4CUV|1|1|G|595
4CUV|1|1|C|596
4CUV|1|1|G|597
*
4CUV|1|1|C|606
4CUV|1|1|A|607
4CUV|1|1|A|608
4CUV|1|1|G|609
4CUV|1|1|G|610
4CUV|1|1|A|611

Current chains

Chain 1

25S RRNA

Nearby chains