J3_4CUV_017

3D structure

PDB id

4CUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UU*AGAAG*CAUUUGA

Length

14 nucleotides

Bulged bases

4CUV|1|1|A|1065, 4CUV|1|1|U|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CUV_017 not in the Motif Atlas

Geometric match to J3_8CRE_011

Geometric discrepancy: 0.2832

The information below is about J3_8CRE_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_09667.1

Basepair signature

cWW-cWW-F-F-cSS-F-F-cWW

Number of instances in this motif group

2

Unit IDs

4CUV|1|1|U|986
4CUV|1|1|U|987
*
4CUV|1|1|A|1062
4CUV|1|1|G|1063
4CUV|1|1|A|1064
4CUV|1|1|A|1065
4CUV|1|1|G|1066
*
4CUV|1|1|C|1092
4CUV|1|1|A|1093
4CUV|1|1|U|1094
4CUV|1|1|U|1095
4CUV|1|1|U|1096
4CUV|1|1|G|1097
4CUV|1|1|A|1098

Current chains

Chain 1

25S RRNA

Nearby chains