J3_4CUV_018

3D structure

PDB id

4CUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CUV_018 not in the Motif Atlas

Geometric match to J3_5J7L_040

Geometric discrepancy: 0.2011

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

4CUV|1|1|G|1230
4CUV|1|1|A|1231
4CUV|1|1|C|1232
*
4CUV|1|1|G|1256
4CUV|1|1|C|1257
4CUV|1|1|U|1258
4CUV|1|1|A|1259
4CUV|1|1|A|1260
4CUV|1|1|G|1261
4CUV|1|1|G|1262
*
4CUV|1|1|C|1277
4CUV|1|1|A|1278
4CUV|1|1|C|1279

Current chains

Chain 1

25S RRNA

Nearby chains