J3_4CUV_022

3D structure

PDB id

4CUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CUV_022 not in the Motif Atlas

Geometric match to J3_8P9A_058

Geometric discrepancy: 0.0945

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

4CUV|1|1|A|1654
4CUV|1|1|G|1655
4CUV|1|1|A|1656
4CUV|1|1|C|1657
4CUV|1|1|G|1658
*
4CUV|1|1|C|1791
4CUV|1|1|C|1792
*
4CUV|1|1|G|1796
4CUV|1|1|A|1797
4CUV|1|1|A|1798
4CUV|1|1|A|1799
4CUV|1|1|A|1800
4CUV|1|1|U|1801

Current chains

Chain 1

25S RRNA

Nearby chains