J3_4CUV_023

3D structure

PDB id

4CUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGCU*ACGUUCUAGCAUUCAAG*UGAU

Length

25 nucleotides

Bulged bases

4CUV|1|1|G|2549, 4CUV|1|1|U|2550, 4CUV|1|1|U|2551, 4CUV|1|1|A|2554, 4CUV|1|1|U|2558, 4CUV|1|1|U|2559, 4CUV|1|1|C|2560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CUV_023 not in the Motif Atlas

Geometric match to J3_8CRE_020

Geometric discrepancy: 0.193

The information below is about J3_8CRE_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28639.1

Basepair signature

cWW-tSS-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

4CUV|1|1|A|2529
4CUV|1|1|G|2530
4CUV|1|1|C|2531
4CUV|1|1|U|2532
*
4CUV|1|1|A|2547
4CUV|1|1|C|2548
4CUV|1|1|G|2549
4CUV|1|1|U|2550
4CUV|1|1|U|2551
4CUV|1|1|C|2552
4CUV|1|1|U|2553
4CUV|1|1|A|2554
4CUV|1|1|G|2555
4CUV|1|1|C|2556
4CUV|1|1|A|2557
4CUV|1|1|U|2558
4CUV|1|1|U|2559
4CUV|1|1|C|2560
4CUV|1|1|A|2561
4CUV|1|1|A|2562
4CUV|1|1|G|2563
*
4CUV|1|1|U|2578
4CUV|1|1|G|2579
4CUV|1|1|A|2580
4CUV|1|1|U|2581

Current chains

Chain 1

25S RRNA

Nearby chains