J3_4CUV_027

3D structure

PDB id

4CUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AC*GAUACGU*AAUCU

Length

14 nucleotides

Bulged bases

4CUV|1|4|U|60, 4CUV|1|4|C|62

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CUV_027 not in the Motif Atlas

Geometric match to J3_8P9A_067

Geometric discrepancy: 0.1132

The information below is about J3_8P9A_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_01004.1

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

10

Unit IDs

4CUV|1|4|A|44
4CUV|1|4|C|45
*
4CUV|1|4|G|58
4CUV|1|4|A|59
4CUV|1|4|U|60
4CUV|1|4|A|61
4CUV|1|4|C|62
4CUV|1|4|G|63
4CUV|1|4|U|64
*
4CUV|1|4|A|96
4CUV|1|4|A|97
4CUV|1|4|U|98
4CUV|1|4|C|99
4CUV|1|4|U|100

Current chains

Chain 4

5.8S RRNA

Nearby chains