J3_4CUX_002

3D structure

PDB id

4CUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CUX_002 not in the Motif Atlas

Geometric match to J3_8P9A_073

Geometric discrepancy: 0.1604

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.2

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

3

Unit IDs

4CUX|1|2|A|760
4CUX|1|2|G|761
4CUX|1|2|A|762
4CUX|1|2|G|763
*
4CUX|1|2|C|773
4CUX|1|2|A|774
4CUX|1|2|G|775
*
4CUX|1|2|U|785
4CUX|1|2|C|786
4CUX|1|2|G|787
4CUX|1|2|A|788
4CUX|1|2|A|789
4CUX|1|2|U|790

Current chains

Chain 2

18S RRNA

Nearby chains