J3_4CUX_006

3D structure

PDB id

4CUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCUUAG*CGAGAC*GCAAUA

Length

18 nucleotides

Bulged bases

4CUX|1|2|U|1285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CUX_006 not in the Motif Atlas

Geometric match to J3_8P9A_080

Geometric discrepancy: 0.1662

The information below is about J3_8P9A_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17077.1

Basepair signature

cWW-F-F-F-F-F-F-cWW-F-cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4CUX|1|2|U|1283
4CUX|1|2|C|1284
4CUX|1|2|U|1285
4CUX|1|2|U|1286
4CUX|1|2|A|1287
4CUX|1|2|G|1288
*
4CUX|1|2|C|1327
4CUX|1|2|G|1328
4CUX|1|2|A|1329
4CUX|1|2|G|1330
4CUX|1|2|A|1331
4CUX|1|2|C|1332
*
4CUX|1|2|G|1419
4CUX|1|2|C|1420
4CUX|1|2|A|1421
4CUX|1|2|A|1422
4CUX|1|2|U|1423
4CUX|1|2|A|1424

Current chains

Chain 2

18S RRNA

Nearby chains