J3_4CUX_013

3D structure

PDB id

4CUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUA*UUACG*CAAAG

Length

13 nucleotides

Bulged bases

4CUX|1|2|A|1093

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CUX_013 not in the Motif Atlas

Geometric match to J3_8P9A_075

Geometric discrepancy: 0.1502

The information below is about J3_8P9A_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94999.1

Basepair signature

cWW-tWW-cWW-tWW-cWW-F-F

Number of instances in this motif group

2

Unit IDs

4CUX|1|2|C|1037
4CUX|1|2|U|1038
4CUX|1|2|A|1039
*
4CUX|1|2|U|1079
4CUX|1|2|U|1080
4CUX|1|2|A|1081
4CUX|1|2|C|1082
4CUX|1|2|G|1083
*
4CUX|1|2|C|1090
4CUX|1|2|A|1091
4CUX|1|2|A|1092
4CUX|1|2|A|1093
4CUX|1|2|G|1094

Current chains

Chain 2

18S RRNA

Nearby chains