J3_4CXE_005

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GCAG*CGUAG*UCCGAC

Length

15 nucleotides

Bulged bases

4CXE|1|2|A|1592

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CXE_005 not in the Motif Atlas

Geometric match to J3_8P9A_050

Geometric discrepancy: 0.1809

The information below is about J3_8P9A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_21998.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4CXE|1|2|G|1524
4CXE|1|2|C|1525
4CXE|1|2|A|1526
4CXE|1|2|G|1527
*
4CXE|1|2|C|1559
4CXE|1|2|G|1560
4CXE|1|2|U|1561
4CXE|1|2|A|1562
4CXE|1|2|G|1563
*
4CXE|1|2|U|1588
4CXE|1|2|C|1589
4CXE|1|2|C|1590
4CXE|1|2|G|1591
4CXE|1|2|A|1592
4CXE|1|2|C|1593

Current chains

Chain 2

28S RRNA

Nearby chains