J3_4CXE_007

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

4CXE|1|2|U|2765, 4CXE|1|2|A|2766, 4CXE|1|2|U|2767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CXE_007 not in the Motif Atlas

Geometric match to J3_8CRE_014

Geometric discrepancy: 0.2037

The information below is about J3_8CRE_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

4CXE|1|2|G|2379
4CXE|1|2|A|2380
4CXE|1|2|A|2381
4CXE|1|2|G|2382
*
4CXE|1|2|C|2762
4CXE|1|2|C|2763
4CXE|1|2|A|2764
4CXE|1|2|U|2765
4CXE|1|2|A|2766
4CXE|1|2|U|2767
4CXE|1|2|C|2768
*
4CXE|1|2|G|2777
4CXE|1|2|U|2778
4CXE|1|2|C|2779

Current chains

Chain 2

28S RRNA

Nearby chains