J3_4CXE_011

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

4CXE|1|2|A|4424, 4CXE|1|2|U|4425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CXE_011 not in the Motif Atlas

Geometric match to J3_9DFE_017

Geometric discrepancy: 0.2244

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4CXE|1|2|U|4423
4CXE|1|2|A|4424
4CXE|1|2|U|4425
4CXE|1|2|C|4426
*
4CXE|1|2|G|4451
4CXE|1|2|U|4452
4CXE|1|2|U|4453
*
4CXE|1|2|A|4467
4CXE|1|2|C|4468
4CXE|1|2|U|4469
4CXE|1|2|A|4470
4CXE|1|2|A|4471
4CXE|1|2|U|4472
4CXE|1|2|A|4473

Current chains

Chain 2

28S RRNA

Nearby chains