J3_4CXE_014

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CGAUAGUCAACAAGUAC*GGAAAG*CUCG

Length

27 nucleotides

Bulged bases

4CXE|1|2|U|345, 4CXE|1|2|A|353, 4CXE|1|3|C|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CXE_014 not in the Motif Atlas

Geometric match to J3_5J7L_067

Geometric discrepancy: 0.1323

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

4CXE|1|2|C|342
4CXE|1|2|G|343
4CXE|1|2|A|344
4CXE|1|2|U|345
4CXE|1|2|A|346
4CXE|1|2|G|347
4CXE|1|2|U|348
4CXE|1|2|C|349
4CXE|1|2|A|350
4CXE|1|2|A|351
4CXE|1|2|C|352
4CXE|1|2|A|353
4CXE|1|2|A|354
4CXE|1|2|G|355
4CXE|1|2|U|356
4CXE|1|2|A|357
4CXE|1|2|C|358
*
4CXE|1|2|G|365
4CXE|1|2|G|366
4CXE|1|2|A|367
4CXE|1|2|A|368
4CXE|1|2|A|369
4CXE|1|2|G|370
*
4CXE|1|3|C|21
4CXE|1|3|U|22
4CXE|1|3|C|23
4CXE|1|3|G|24

Current chains

Chain 2

28S RRNA

Chain 3

5.8S RRNA

Nearby chains