J3_4CXE_027

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CXE_027 not in the Motif Atlas

Geometric match to J3_8CRE_018

Geometric discrepancy: 0.2198

The information below is about J3_8CRE_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4CXE|1|2|A|2575
4CXE|1|2|G|2576
4CXE|1|2|A|2577
4CXE|1|2|A|2578
4CXE|1|2|G|2579
*
4CXE|1|2|C|2714
4CXE|1|2|C|2715
*
4CXE|1|2|G|2719
4CXE|1|2|A|2720
4CXE|1|2|A|2721
4CXE|1|2|A|2722
4CXE|1|2|A|2723
4CXE|1|2|U|2724

Current chains

Chain 2

28S RRNA

Nearby chains