J3_4D5L_013
3D structure
- PDB id
- 4D5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UCUUAG*CGAGACU*AGCAAUA
- Length
- 20 nucleotides
- Bulged bases
- 4D5L|1|1|U|1342, 4D5L|1|1|A|1483
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4D5L_013 not in the Motif Atlas
- Geometric match to J3_5J7L_008
- Geometric discrepancy: 0.3383
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4D5L|1|1|U|1340
4D5L|1|1|C|1341
4D5L|1|1|U|1342
4D5L|1|1|U|1343
4D5L|1|1|A|1344
4D5L|1|1|G|1345
*
4D5L|1|1|C|1384
4D5L|1|1|G|1385
4D5L|1|1|A|1386
4D5L|1|1|G|1387
4D5L|1|1|A|1388
4D5L|1|1|C|1389
4D5L|1|1|U|1390
*
4D5L|1|1|A|1480
4D5L|1|1|G|1481
4D5L|1|1|C|1482
4D5L|1|1|A|1483
4D5L|1|1|A|1484
4D5L|1|1|U|1485
4D5L|1|1|A|1486
Current chains
- Chain 1
- 18S RRNA 2
Nearby chains
- Chain C
- 40S RIBOSOMAL PROTEIN ES28
- Chain D
- 40S RIBOSOMAL PROTEIN US14
- Chain Q
- 40S RIBOSOMAL PROTEIN US9
- Chain R
- 40S RIBOSOMAL PROTEIN ES17
- Chain U
- 40S RIBOSOMAL PROTEIN US10
- Chain d
- 40S RIBOSOMAL PROTEIN US3
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