J3_4D5Y_012
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 4D5Y|1|2|A|4240
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4D5Y_012 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.1673
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4D5Y|1|2|C|4201
4D5Y|1|2|U|4202
4D5Y|1|2|C|4203
*
4D5Y|1|2|G|4227
4D5Y|1|2|A|4228
4D5Y|1|2|G|4229
*
4D5Y|1|2|C|4238
4D5Y|1|2|A|4239
4D5Y|1|2|A|4240
4D5Y|1|2|A|4241
4D5Y|1|2|A|4242
4D5Y|1|2|G|4243
Current chains
- Chain 2
- 28S Ribosomal RNA
Nearby chains
- Chain 4
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 60S RIBOSOMAL PROTEIN UL18
- Chain J
- 60S RIBOSOMAL PROTEIN UL5
- Chain T
- 60S RIBOSOMAL PROTEIN EL21
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