J3_4D61_003
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- AGAG*CAG*CUGGAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4D61_003 not in the Motif Atlas
- Geometric match to J3_4V88_032
- Geometric discrepancy: 0.1894
- The information below is about J3_4V88_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_54972.1
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
4D61|1|1|A|816
4D61|1|1|G|817
4D61|1|1|A|818
4D61|1|1|G|819
*
4D61|1|1|C|829
4D61|1|1|A|830
4D61|1|1|G|831
*
4D61|1|1|C|843
4D61|1|1|U|844
4D61|1|1|G|845
4D61|1|1|G|846
4D61|1|1|A|847
4D61|1|1|U|848
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain E
- 40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1
- Chain J
- 40S RIBOSOMAL PROTEIN S9
- Chain Y
- 40S RIBOSOMAL PROTEIN S24
Coloring options: