J3_4D61_008
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 4D61|1|1|G|1274, 4D61|1|1|A|1276, 4D61|1|1|A|1506, 4D61|1|1|G|1507, 4D61|1|1|U|1509
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4D61_008 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.5412
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4D61|1|1|C|1272
4D61|1|1|C|1273
4D61|1|1|G|1274
4D61|1|1|G|1275
4D61|1|1|A|1276
4D61|1|1|C|1277
*
4D61|1|1|G|1320
4D61|1|1|G|1321
4D61|1|1|G|1322
4D61|1|1|U|1323
4D61|1|1|G|1324
*
4D61|1|1|U|1504
4D61|1|1|U|1505
4D61|1|1|A|1506
4D61|1|1|G|1507
4D61|1|1|A|1508
4D61|1|1|U|1509
4D61|1|1|G|1510
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain K
- 40S RIBOSOMAL PROTEIN S10
- Chain M
- 40S RIBOSOMAL PROTEIN S12
- Chain d
- 40S RIBOSOMAL PROTEIN S29
- Chain f
- UBIQUITIN-40S RIBOSOMAL PROTEIN S27A
- Chain h
- EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1
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