J3_4D67_001
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UUGAAAAG*CG*CA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4D67_001 not in the Motif Atlas
- Homologous match to J3_5TBW_002
- Geometric discrepancy: 0.2048
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
4D67|1|2|U|371
4D67|1|2|U|372
4D67|1|2|G|373
4D67|1|2|A|374
4D67|1|2|A|375
4D67|1|2|A|376
4D67|1|2|A|377
4D67|1|2|G|378
*
4D67|1|2|C|405
4D67|1|2|G|406
*
4D67|1|3|C|19
4D67|1|3|A|20
Current chains
- Chain 2
- 28S RRNA
- Chain 3
- 5.8S RRNA
Nearby chains
- Chain C
- 60S RIBOSOMAL PROTEIN L4
- Chain Y
- 60S RIBOSOMAL PROTEIN L26
- Chain l
- 60S RIBOSOMAL PROTEIN L39
Coloring options: