J3_4D67_011

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

ACGG*CUGACC*GGGACAGU

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4D67_011 not in the Motif Atlas

Homologous match to J3_5TBW_012

Geometric discrepancy: 0.306

The information below is about J3_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_18654.1

Basepair signature

cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F

Number of instances in this motif group

2

Unit IDs

4D67|1|2|A|3905
4D67|1|2|C|3906
4D67|1|2|G|3907
4D67|1|2|G|3908
*
4D67|1|2|C|4042
4D67|1|2|U|4043
4D67|1|2|G|4044
4D67|1|2|A|4045
4D67|1|2|C|4046
4D67|1|2|C|4047
*
4D67|1|2|G|4127
4D67|1|2|G|4128
4D67|1|2|G|4129
4D67|1|2|A|4130
4D67|1|2|C|4131
4D67|1|2|A|4132
4D67|1|2|G|4133
4D67|1|2|U|4134

Current chains

Chain 2

28S RRNA

Nearby chains

Chain A

60S RIBOSOMAL PROTEIN L8

Chain G

60S RIBOSOMAL PROTEIN L7A

Chain N

60S RIBOSOMAL PROTEIN L15