J3_4D67_026
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4D67_026 not in the Motif Atlas
- Homologous match to J3_8P9A_055
- Geometric discrepancy: 0.169
- The information below is about J3_8P9A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_31965.2
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
4D67|1|2|U|2417
4D67|1|2|C|2418
4D67|1|2|G|2419
4D67|1|2|G|2420
4D67|1|2|U|2421
4D67|1|2|C|2422
*
4D67|1|2|G|2492
4D67|1|2|G|2493
4D67|1|2|A|2494
4D67|1|2|G|2495
4D67|1|2|U|2496
*
4D67|1|2|A|2513
4D67|1|2|A|2514
Current chains
- Chain 2
- 28S RRNA
Nearby chains
- Chain 3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain X
- 60S RIBOSOMAL PROTEIN L23A
- Chain g
- 60S RIBOSOMAL PROTEIN L34
- Chain k
- 60S RIBOSOMAL PROTEIN L38
- Chain l
- 60S RIBOSOMAL PROTEIN L39
Coloring options: