J3_4DR4_001

3D structure

PDB id

4DR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4DR4|1|A|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4DR4_001 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0903

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4DR4|1|A|C|826
4DR4|1|A|U|827
4DR4|1|A|A|828
4DR4|1|A|G|829
*
4DR4|1|A|C|857
4DR4|1|A|G|858
4DR4|1|A|A|859
4DR4|1|A|A|860
4DR4|1|A|G|861
*
4DR4|1|A|C|868
4DR4|1|A|G|869
4DR4|1|A|U|870
4DR4|1|A|U|871
4DR4|1|A|A|872
4DR4|1|A|A|873
4DR4|1|A|G|874

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain H

30S ribosomal protein S8