J3_4DR6_012
3D structure
- PDB id
- 4DR6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position and streptomycin bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 4DR6|1|A|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4DR6_012 not in the Motif Atlas
- Homologous match to J3_4LFB_012
- Geometric discrepancy: 0.1119
- The information below is about J3_4LFB_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4DR6|1|A|U|672
4DR6|1|A|G|673
*
4DR6|1|A|C|717
4DR6|1|A|G|718
4DR6|1|A|C|719
4DR6|1|A|C|720
4DR6|1|A|G|721
4DR6|1|A|A|722
4DR6|1|A|U|723
4DR6|1|A|G|724
4DR6|1|A|G|725
*
4DR6|1|A|C|732
4DR6|1|A|A|733
4DR6|1|A|G|734
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain F
- 30S ribosomal protein S6
- Chain K
- 30S ribosomal protein S11
- Chain O
- 30S ribosomal protein S15
- Chain R
- 30S ribosomal protein S18
- Chain a
- 5'-R(P*CP*UP*UP*GP*AP*GP*GP*(PSU)P*GP*GP*U)-3'
Coloring options: