J3_4DR6_016

3D structure

PDB id

4DR6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position and streptomycin bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4DR6|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4DR6_016 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.2014

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4DR6|1|A|C|990
4DR6|1|A|U|991
4DR6|1|A|U|992
4DR6|1|A|G|993
4DR6|1|A|A|994
4DR6|1|A|C|995
4DR6|1|A|A|996
4DR6|1|A|U|997
*
4DR6|1|A|A|1044
4DR6|1|A|C|1045
4DR6|1|A|A|1046
4DR6|1|A|G|1047
*
4DR6|1|A|C|1210
4DR6|1|A|U|1211
4DR6|1|A|U|1212
4DR6|1|A|A|1213
4DR6|1|A|C|1214
4DR6|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14