J3_4DR7_001
3D structure
- PDB id
- 4DR7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.75 Å
Loop
- Sequence
- CUAG*CGAAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 4DR7|1|A|U|871
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4DR7_001 not in the Motif Atlas
- Homologous match to J3_4LFB_001
- Geometric discrepancy: 0.0752
- The information below is about J3_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
4DR7|1|A|C|826
4DR7|1|A|U|827
4DR7|1|A|A|828
4DR7|1|A|G|829
*
4DR7|1|A|C|857
4DR7|1|A|G|858
4DR7|1|A|A|859
4DR7|1|A|A|860
4DR7|1|A|G|861
*
4DR7|1|A|C|868
4DR7|1|A|G|869
4DR7|1|A|U|870
4DR7|1|A|U|871
4DR7|1|A|A|872
4DR7|1|A|A|873
4DR7|1|A|G|874
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain E
- 30S ribosomal protein S5
- Chain H
- 30S ribosomal protein S8
- Chain a
- 5'-R(P*UP*GP*GP*AP*AP*AP*GP*(PSU))-3'
Coloring options: