3D structure

PDB id
4DUY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C
Experimental method
X-RAY DIFFRACTION
Resolution
3.39 Å

Loop

Sequence
CUAG*CGAAG*CGUUAAG
Length
16 nucleotides
Bulged bases
4DUY|1|A|U|871, 4DUY|1|A|A|873
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4DUY_001 not in the Motif Atlas
Homologous match to J3_4LFB_001
Geometric discrepancy: 0.0524
The information below is about J3_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

4DUY|1|A|C|826
4DUY|1|A|U|827
4DUY|1|A|A|828
4DUY|1|A|G|829
*
4DUY|1|A|C|857
4DUY|1|A|G|858
4DUY|1|A|A|859
4DUY|1|A|A|860
4DUY|1|A|G|861
*
4DUY|1|A|C|868
4DUY|1|A|G|869
4DUY|1|A|U|870
4DUY|1|A|U|871
4DUY|1|A|A|872
4DUY|1|A|A|873
4DUY|1|A|G|874

Current chains

Chain A
16S rRNA

Nearby chains

Chain B
ribosomal protein S2
Chain H
ribosomal protein S8

Coloring options:


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