J3_4DV0_020

3D structure

PDB id

4DV0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4DV0|1|A|U|1212, 4DV0|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4DV0_020 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.2384

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4DV0|1|A|C|990
4DV0|1|A|U|991
4DV0|1|A|U|992
4DV0|1|A|G|993
4DV0|1|A|A|994
4DV0|1|A|C|995
4DV0|1|A|A|996
4DV0|1|A|U|997
*
4DV0|1|A|A|1044
4DV0|1|A|C|1045
4DV0|1|A|A|1046
4DV0|1|A|G|1047
*
4DV0|1|A|C|1210
4DV0|1|A|U|1211
4DV0|1|A|U|1212
4DV0|1|A|A|1213
4DV0|1|A|C|1214
4DV0|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

ribosomal protein S14