J3_4DV1_001
3D structure
- PDB id
- 4DV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.85 Å
Loop
- Sequence
- CUAG*CGAAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 4DV1|1|A|U|871
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4DV1_001 not in the Motif Atlas
- Homologous match to J3_4LFB_001
- Geometric discrepancy: 0.0616
- The information below is about J3_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
4DV1|1|A|C|826
4DV1|1|A|U|827
4DV1|1|A|A|828
4DV1|1|A|G|829
*
4DV1|1|A|C|857
4DV1|1|A|G|858
4DV1|1|A|A|859
4DV1|1|A|A|860
4DV1|1|A|G|861
*
4DV1|1|A|C|868
4DV1|1|A|G|869
4DV1|1|A|U|870
4DV1|1|A|U|871
4DV1|1|A|A|872
4DV1|1|A|A|873
4DV1|1|A|G|874
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain B
- ribosomal protein S2
- Chain H
- ribosomal protein S8
Coloring options: