J3_4DV2_014
3D structure
- PDB id
- 4DV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.65 Å
Loop
- Sequence
- CGG*CUAGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 4DV2|1|A|A|653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4DV2_014 not in the Motif Atlas
- Homologous match to J3_4LFB_015
- Geometric discrepancy: 0.062
- The information below is about J3_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4DV2|1|A|C|586
4DV2|1|A|G|587
4DV2|1|A|G|588
*
4DV2|1|A|C|651
4DV2|1|A|U|652
4DV2|1|A|A|653
4DV2|1|A|G|654
4DV2|1|A|A|655
*
4DV2|1|A|U|751
4DV2|1|A|G|752
4DV2|1|A|A|753
4DV2|1|A|C|754
4DV2|1|A|G|755
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain H
- ribosomal protein S8
- Chain L
- ribosomal protein S12
- Chain O
- ribosomal protein S15
- Chain Q
- ribosomal protein S17
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