J3_4DV3_001

3D structure

PDB id

4DV3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4DV3|1|A|U|871, 4DV3|1|A|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4DV3_001 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0529

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4DV3|1|A|C|826
4DV3|1|A|U|827
4DV3|1|A|A|828
4DV3|1|A|G|829
*
4DV3|1|A|C|857
4DV3|1|A|G|858
4DV3|1|A|A|859
4DV3|1|A|A|860
4DV3|1|A|G|861
*
4DV3|1|A|C|868
4DV3|1|A|G|869
4DV3|1|A|U|870
4DV3|1|A|U|871
4DV3|1|A|A|872
4DV3|1|A|A|873
4DV3|1|A|G|874

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

ribosomal protein S2

Chain H

ribosomal protein S8