J3_4DV3_002

3D structure

PDB id

4DV3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4DV3_002 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.0923

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4DV3|1|A|U|943
4DV3|1|A|G|944
4DV3|1|A|G|945
4DV3|1|A|A|946
*
4DV3|1|A|U|1235
4DV3|1|A|A|1236
4DV3|1|A|C|1237
*
4DV3|1|A|G|1337
4DV3|1|A|G|1338
4DV3|1|A|A|1339
4DV3|1|A|A|1340

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

ribosomal protein S9

Chain M

ribosomal protein S13

Chain U

ribosomal protein THX