3D structure

PDB id
4DV3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A, bound with streptomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.55 Å

Loop

Sequence
GCCUAAG*UAGGAAUCU*AGC
Length
19 nucleotides
Bulged bases
4DV3|1|A|C|48, 4DV3|1|A|A|50, 4DV3|1|A|A|51
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4DV3_012 not in the Motif Atlas
Homologous match to J3_4LFB_014
Geometric discrepancy: 0.065
The information below is about J3_4LFB_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46317.4
Basepair signature
cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4DV3|1|A|G|46
4DV3|1|A|C|47
4DV3|1|A|C|48
4DV3|1|A|U|49
4DV3|1|A|A|50
4DV3|1|A|A|51
4DV3|1|A|G|52
*
4DV3|1|A|U|359
4DV3|1|A|A|360
4DV3|1|A|G|361
4DV3|1|A|G|362
4DV3|1|A|A|363
4DV3|1|A|A|364
4DV3|1|A|U|365
4DV3|1|A|C|366
4DV3|1|A|U|367
*
4DV3|1|A|A|393
4DV3|1|A|G|394
4DV3|1|A|C|395

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
ribosomal protein S12
Chain P
ribosomal protein S16

Coloring options:


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