J3_4DV4_016
3D structure
- PDB id
- 4DV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A914G
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.65 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 4DV4|1|A|U|1212, 4DV4|1|A|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4DV4_016 not in the Motif Atlas
- Homologous match to J3_4LFB_016
- Geometric discrepancy: 0.2407
- The information below is about J3_4LFB_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28881.1
- Basepair signature
- cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
4DV4|1|A|C|990
4DV4|1|A|U|991
4DV4|1|A|U|992
4DV4|1|A|G|993
4DV4|1|A|A|994
4DV4|1|A|C|995
4DV4|1|A|A|996
4DV4|1|A|U|997
*
4DV4|1|A|A|1044
4DV4|1|A|C|1045
4DV4|1|A|A|1046
4DV4|1|A|G|1047
*
4DV4|1|A|C|1210
4DV4|1|A|U|1211
4DV4|1|A|U|1212
4DV4|1|A|A|1213
4DV4|1|A|C|1214
4DV4|1|A|G|1215
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain N
- ribosomal protein S14
Coloring options: