J3_4GKJ_013
3D structure
- PDB id
- 4GKJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GCCUAAG*UAGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 4GKJ|1|A|C|48, 4GKJ|1|A|A|50, 4GKJ|1|A|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4GKJ_013 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.0859
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4GKJ|1|A|G|46
4GKJ|1|A|C|47
4GKJ|1|A|C|48
4GKJ|1|A|U|49
4GKJ|1|A|A|50
4GKJ|1|A|A|51
4GKJ|1|A|G|52
*
4GKJ|1|A|U|354
4GKJ|1|A|A|355
4GKJ|1|A|G|356
4GKJ|1|A|G|357
4GKJ|1|A|A|358
4GKJ|1|A|A|359
4GKJ|1|A|U|360
4GKJ|1|A|C|361
4GKJ|1|A|U|362
*
4GKJ|1|A|A|388
4GKJ|1|A|G|389
4GKJ|1|A|C|390
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain P
- 30S ribosomal protein S16
Coloring options: