J3_4GKJ_015

3D structure

PDB id

4GKJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4GKJ|1|A|U|1193, 4GKJ|1|A|C|1195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4GKJ_015 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1517

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4GKJ|1|A|C|967
4GKJ|1|A|U|968
4GKJ|1|A|U|969
4GKJ|1|A|G|970
4GKJ|1|A|A|971
4GKJ|1|A|C|972
4GKJ|1|A|A|973
4GKJ|1|A|U|974
*
4GKJ|1|A|A|1026
4GKJ|1|A|C|1027
4GKJ|1|A|A|1028
4GKJ|1|A|G|1029
*
4GKJ|1|A|C|1191
4GKJ|1|A|U|1192
4GKJ|1|A|U|1193
4GKJ|1|A|A|1194
4GKJ|1|A|C|1195
4GKJ|1|A|G|1196

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z