J3_4GKK_015

3D structure

PDB id

4GKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4GKK|1|A|U|1193, 4GKK|1|A|C|1195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4GKK_015 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1781

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4GKK|1|A|C|967
4GKK|1|A|U|968
4GKK|1|A|U|969
4GKK|1|A|G|970
4GKK|1|A|A|971
4GKK|1|A|C|972
4GKK|1|A|A|973
4GKK|1|A|U|974
*
4GKK|1|A|A|1026
4GKK|1|A|C|1027
4GKK|1|A|A|1028
4GKK|1|A|G|1029
*
4GKK|1|A|C|1191
4GKK|1|A|U|1192
4GKK|1|A|U|1193
4GKK|1|A|A|1194
4GKK|1|A|C|1195
4GKK|1|A|G|1196

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z