J3_4GMA_001

3D structure

PDB id

4GMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the adenosylcobalamin riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UC*GUUAAAA*UG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4GMA_001 not in the Motif Atlas

Geometric match to J3_6VMY_001

Geometric discrepancy: 0.1995

The information below is about J3_6VMY_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_70599.1

Basepair signature

cWW-F-cWW-F-F-cWW-F-F

Number of instances in this motif group

3

Unit IDs

4GMA|1|Z|U|17
4GMA|1|Z|C|18
*
4GMA|1|Z|G|41
4GMA|1|Z|U|42
4GMA|1|Z|U|43
4GMA|1|Z|A|44
4GMA|1|Z|A|45
4GMA|1|Z|A|46
4GMA|1|Z|A|47
*
4GMA|1|Z|U|167
4GMA|1|Z|G|168

Current chains

Chain Z

Adenosylcobalamin riboswitch

Nearby chains