J3_6VMY_001

3D structure

PDB id

6VMY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the B. subtilis cobalamin riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UG*CUUAAAA*UG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_70599.1

Basepair signature

cWW-F-cWW-F-F-cWW-F-F

Number of instances in this motif group

3

Unit IDs

6VMY|1|A|U|213
6VMY|1|A|G|214
*
6VMY|1|A|C|237
6VMY|1|A|U|238
6VMY|1|A|U|239
6VMY|1|A|A|240
6VMY|1|A|A|241
6VMY|1|A|A|242
6VMY|1|A|A|243
*
6VMY|1|A|U|311
6VMY|1|A|G|312

Current chains

Chain A

B. subtilis cobalamin riboswitch

Nearby chains